10.53 Omitting Observations

20180726 An alternative is to remove observations that have missing values. Here data.table::na.omit() identifies the rows to omit based on the vars to be included for modelling. The list of rows to omit is stored as the na.action attribute of the returned object. We then remove these observations from the dataset.

Notice we keep a copy of the original dataset and then restore it.

# Backup the dataset so we can restore it as required.

ods <- ds

# Initialise the list of observations to be removed.

omit <- NULL
# Review the current dataset.

ds[vars] %>% nrow()
## [1] 220094
ds[vars] %>% is.na() %>% sum()
## [1] 544454
# Identify any observations with missing values.

mo <- attr(na.omit(ds[vars]), "na.action")

# Record the observations to omit.

omit <- union(omit, mo)

# If there are observations to omit then remove them.

if (length(omit)) ds <- ds[-omit,]

# Confirm the observations have been removed.

ds[vars] %>% nrow()
## [1] 70157
ds[vars] %>% is.na() %>% sum()
## [1] 0
# Restore the original dataset.

ds <- ods

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